Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

[detail level 123]

▼Npteros
CAtom	Class which represents a single atom
CAtomHandler	Auxilary type used to incapsulate the atom and its current coordinates Used internally in Selection::operator[] and in iterator access to Selection
CBabelWrapper	Generic API for reading and writing any molecule file formats
CDataContainer	Auxiliary container for sending data to tasks
CDcdFile	Generic API for reading and writing any molecule file formats
CDistanceSearchWithin	Class for within searching
CFileHandler	Generic API for reading and writing any molecule file formats
CForceField	Force field parameters of the system
CFrame	Definition of single trajectory frame
CFrameInfo	Information about current frame, which is passed to Consumer for analysis along with the frame itself
CGNM	Implementation of the Gaussian Network Model (GNM) protein model
CGrid	Sorting the atoms from given selection into the cells of 3D grid with given dimensions
CGroFile	Reader for GRO files. It doesn't use VMD plugins because it doesn't support writing
CHistogram	Simple histogram class
CHistogram2D	Simple 2D histogram class
CMol2File	Use VMD plugin for MOL2
COptions	All options obtained from command line including nested options for tasks
CPdbFile	Use VMD plugin for PDB
CPeriodicBox	Class encapsulating all operations with arbitrary triclinic periodic boxes This class stores the periodic box itself and also contains pre-computed matrices for converting laboratory coordinates to the coordinates in triclinic basis and vice versa
CPterosError	Represents an error in the Pteros code. Used for all Pteros-related exceptions
▼CSelection	Selection class
Citerator	Random-access forward iterator for Selection
CSelectionParser	Selection parser class
CSystem	The system of atoms
CTaskPlugin	Base class for plugins
CTngFile	Use VMD plugin for TNG
CTrajectoryReader	The base class for trajectory processing It provides facilities for loading large trajectories by frames and to analyze each frame by user-defined function
CVmdMolfilePluginWrapper	Generic API for reading and writing any molecule file formats
CXyzFile	Generic API for reading and writing any molecule file formats