Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

[detail level 123]

Cpteros::Atom	Class which represents a single atom
Cpteros::AtomHandler	Auxilary type used to incapsulate the atom and its current coordinates Used internally in Selection::operator[] and in iterator access to Selection
Cpteros::DataContainer	Auxiliary container for sending data to tasks
Cpteros::DistanceSearchWithin	Class for within searching
▼Cstd::exception	STL class
▼Cstd::runtime_error	STL class
Cpteros::PterosError	Represents an error in the Pteros code. Used for all Pteros-related exceptions
▼Cpteros::FileHandler	Generic API for reading and writing any molecule file formats
▼Cpteros::BabelWrapper	Generic API for reading and writing any molecule file formats
Cpteros::Mol2File	Use VMD plugin for MOL2
Cpteros::GroFile	Reader for GRO files. It doesn't use VMD plugins because it doesn't support writing
▼Cpteros::VmdMolfilePluginWrapper	Generic API for reading and writing any molecule file formats
Cpteros::DcdFile	Generic API for reading and writing any molecule file formats
Cpteros::PdbFile	Use VMD plugin for PDB
Cpteros::TngFile	Use VMD plugin for TNG
Cpteros::XyzFile	Generic API for reading and writing any molecule file formats
Cpteros::ForceField	Force field parameters of the system
Cpteros::Frame	Definition of single trajectory frame
Cpteros::FrameInfo	Information about current frame, which is passed to Consumer for analysis along with the frame itself
Cpteros::GNM	Implementation of the Gaussian Network Model (GNM) protein model
Cpteros::Grid	Sorting the atoms from given selection into the cells of 3D grid with given dimensions
Cpteros::Histogram	Simple histogram class
Cpteros::Histogram2D	Simple 2D histogram class
Cpteros::Selection::iterator	Random-access forward iterator for Selection
Cpteros::Options	All options obtained from command line including nested options for tasks
Cpteros::PeriodicBox	Class encapsulating all operations with arbitrary triclinic periodic boxes This class stores the periodic box itself and also contains pre-computed matrices for converting laboratory coordinates to the coordinates in triclinic basis and vice versa
Cpteros::Selection	Selection class
Cpteros::SelectionParser	Selection parser class
Cpteros::System	The system of atoms
Cpteros::TaskPlugin	Base class for plugins
Cpteros::TrajectoryReader	The base class for trajectory processing It provides facilities for loading large trajectories by frames and to analyze each frame by user-defined function